PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0327s0220.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 451aa    MW: 48640.4 Da    PI: 7.6988
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0327s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19216265255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a++ a+++++g
  SapurV1A.0327s0220.1.p 216 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDDAALRFRG 265
                             59*******.**********7.....337*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-13216265IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-22216274IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-32216274IPR001471AP2/ERF domain
PROSITE profilePS5103225.633216273IPR001471AP2/ERF domain
SMARTSM003802.6E-35216279IPR001471AP2/ERF domain
CDDcd000182.73E-20216275No hitNo description
PRINTSPR003671.7E-11217228IPR001471AP2/ERF domain
PRINTSPR003671.7E-11239255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MCVLKVANPR GDSGEYRRYP ARDSDDNQEE RSYTAQQIFS ELNPPRQRRA EVAQPPQMFT  60
GYDNSSEMSA IVSALTHVVS GHRESTSDWG SYEPAGETIT SAFVQAARGP NATPASPPLS  120
AYSSASGSGS WIGQKRGREK EPGAATPLKE SLPGVYRGLN GLRSSLGDSL SSGAATETEE  180
VSASTSVFPA TATPSATAPP STETASMGET GERKIRYRGV RQRPWGKWAA EIRDPHKAAR  240
VWLGTFETAE AAARAYDDAA LRFRGNRAKL NFPENARLPP AQTQNVTASQ APVFRSQLPS  300
DHRFQSISSP RQQAQRPQVP APALFQSQPD IIRDYWDYSQ LLQNSGDFLE QQQPPSNLLQ  360
QMFYNPQLAS LQSSTFSLSP SSTSGSSFAE ISSGSLSSTL PPSASSFPLL FAGQQLGYFR  420
SPQNLNPAAS SDFPVPPWTD SSPRHPSSTG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22217273663ATERF1
3gcc_A2e-22217273663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306712.20.0AP2 domain-containing transcription factor family protein
TrEMBLB9H7U80.0B9H7U8_POPTR; AP2 domain-containing transcription factor family protein
STRINGPOPTR_0005s21690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-24ethylene response factor 110